Transcript: lnc-MRPL39-7:1

Basic information

LNCipedia transcript ID: lnc-MRPL39-7:1 
LNCipedia gene ID: lnc-MRPL39-7
Ensembl Gene ID: ENSG00000230379
Ensembl Transcript ID: ENST00000444178
Location (hg38): chr21:24938431-24992817
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 309 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028895; ENST00000444178; ENST00000444178.1; AP000146.2-001; OTTHUMT00000171133.1; NONHSAT081459
Alternative gene names: XLOC_014032; linc-TMPRSS15-12; ENSG00000230379; AP000146.2; ENSG00000230379.1; OTTHUMG00000078324.1; ENSG00000230379.5; AP000146.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.3343 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL39-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-6:1
3.1 lnc-MRPL39-7:1
4.0 lnc-MRPL39-7:1
4.1 lnc-MRPL39-7:1
5.0 lnc-MRPL39-7:1
5.1 lnc-N6AMT1-37:1
5.2 lnc-MRPL39-7:1