Transcript: lnc-MRPL40-2:1

Basic information

LNCipedia transcript ID: lnc-MRPL40-2:1 
LNCipedia gene ID: lnc-MRPL40-2
Location (hg38): chr22:19415432-19421845
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3627 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000512240; NONHSAT083403
Alternative gene names: ENSG00000248786; AC000079.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.2834 non-coding 
CPAT coding probability 4.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL40-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL40-2:1
3.1 lnc-MRPL40-2:1
4.0 lnc-MRPL40-2:1
4.1 lnc-MRPL40-2:1
5.0 lnc-MRPL40-2:1
5.1 lnc-SERPIND1-33:1
5.2 lnc-MRPL40-2:1