Transcript: lnc-MRPL40-3:1

Basic information

LNCipedia transcript ID: lnc-MRPL40-3:1 
LNCipedia gene ID: lnc-MRPL40-3
Ensembl Gene ID: ENSG00000273300
Ensembl Transcript ID: ENST00000607934
Location (hg38): chr22:19454179-19454605
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 427 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607934.1
Alternative gene names: ENSG00000273300.1; AC000068.9; AC000068.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.9319 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL40-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPL40-3:1
4.0 lnc-MRPL40-3:1
4.1 lnc-MRPL40-3:1
5.0 lnc-MRPL40-3:1
5.1 lnc-SERPIND1-31:1
5.2 lnc-MRPL40-3:1