Transcript: lnc-MRPS14-2:1

Basic information

LNCipedia transcript ID: lnc-MRPS14-2:1 
LNCipedia gene ID: lnc-MRPS14-2
Ensembl Gene ID: ENSG00000229531
Ensembl Transcript ID: ENST00000452442
RefSeq ID: NR_121196
Location (hg38): chr1:174934947-174954261
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 670 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000452442.1; RP1-102G20.5-001; OTTHUMT00000084581.1; NONHSAT007740; NR_121196; ENST00000452442.5; NR_121196.1
Alternative gene names: ENSG00000229531.1; RP1-102G20.5; OTTHUMG00000034940.1; ENSG00000229531.5; Z99127.1; LOC101928696


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -253.1284 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPS14-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPS14-2:1
4.0 lnc-MRPS14-2:1
4.1 lnc-MRPS14-2:1
5.0 lnc-MRPS14-2:1
5.1 lnc-SH2D1B-134:1
5.2 lnc-MRPS14-2:1