Transcript: lnc-MRPS23-1:1

Basic information

LNCipedia transcript ID: lnc-MRPS23-1:1 
LNCipedia gene ID: lnc-MRPS23-1
Ensembl Gene ID: ENSG00000265542
Ensembl Transcript ID: ENST00000580960
Location (hg38): chr17:57771946-57834749
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 505 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580960.1; RP11-60A24.3-002; OTTHUMT00000443300.1
Alternative gene names: ENSG00000265542.1; RP11-60A24.3; OTTHUMG00000178773.1; ENSG00000265542.5; AC015845.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.829 non-coding 
CPAT coding probability 24.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPS23-1:1 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPS23-1:1
4.0 lnc-MRPS23-1:1
4.1 lnc-MRPS23-1:1
5.0 lnc-MRPS23-1:1
5.1 lnc-PTRH2-38:4
5.2 lnc-MRPS23-1:1