Transcript: lnc-MRPS30-1:1

Basic information

LNCipedia transcript ID: lnc-MRPS30-1:1 
LNCipedia gene ID: lnc-MRPS30-1
Ensembl Gene ID: ENSG00000248779
Ensembl Transcript ID: ENST00000511712
Location (hg38): chr5:44752949-44765744
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 591 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009394; ENST00000511712; ENST00000511712.1; RP11-53O19.2-001; OTTHUMT00000367910.1; NONHSAT101342
Alternative gene names: XLOC_004373; linc-MRPS30-1; ENSG00000248779; RP11-53O19.2; ENSG00000248779.1; OTTHUMG00000162208.1; AC093297.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.5541 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPS30-1:1 no no no no

Available literature

  1. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS30-1:1
3.1 lnc-MRPS30-1:1
4.0 lnc-MRPS30-1:1
4.1 lnc-MRPS30-1:1
5.0 lnc-MRPS30-1:1
5.1 lnc-CARD6-67:1
5.2 lnc-MRPS30-1:1