Transcript: lnc-MRPS35-1:1

Basic information

LNCipedia transcript ID: lnc-MRPS35-1:1 
LNCipedia gene ID: lnc-MRPS35-1
Location (hg38): chr12:27704568-27708363
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 427 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000538640; ENST00000538640.1; RP11-1060J15.7-001; OTTHUMT00000402896.1; NONHSAT027451
Alternative gene names: ENSG00000256504; RP11-1060J15.7; ENSG00000256504.1; OTTHUMG00000169214.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.0275 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPS35-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS35-1:1
3.1 lnc-MRPS35-1:1
4.0 lnc-MRPS35-1:1
4.1 lnc-MRPS35-1:1
5.0 lnc-MRPS35-1:1
5.1 lnc-KIAA1551-50:1
5.2 lnc-MRPS35-1:1