Transcript: lnc-MRPS35-1:2

Basic information

LNCipedia transcript ID: lnc-MRPS35-1:2 
LNCipedia gene ID: lnc-MRPS35-1
Ensembl Gene ID: ENSG00000256504
Ensembl Transcript ID: ENST00000538640
Location (hg38): chr12:27704568-27708365
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538640.2
Alternative gene names: ENSG00000256504.2; RP11-1060J15.7; AC009509.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.0275 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPS35-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MRPS35-1:2
4.1 lnc-MRPS35-1:2
5.0 lnc-MRPS35-1:2
5.1 lnc-KIAA1551-50:2
5.2 lnc-MRPS35-1:2