Transcript: lnc-MS4A6A-2:1

Basic information

LNCipedia transcript ID: lnc-MS4A6A-2:1 
LNCipedia gene ID: lnc-MS4A6A-2
Ensembl Gene ID: ENSG00000254952
Ensembl Transcript ID: ENST00000533106
Location (hg38): chr11:60159687-60160822
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 385 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533106; ENST00000533106.1; AP001257.1-001; OTTHUMT00000393845.1; NONHSAT021559; FPKM1_group_4687_transcript_1
Alternative gene names: ENSG00000254952; AP001257.1; ENSG00000254952.1; OTTHUMG00000167240.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.4179 non-coding 
CPAT coding probability 8.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MS4A6A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MS4A6A-1:1
3.1 lnc-MS4A6A-1:1
4.0 lnc-MS4A6A-2:1
4.1 lnc-MS4A6A-2:1
5.0 lnc-MS4A6A-2:1
5.1 lnc-OR5M11-48:1
5.2 lnc-MS4A6A-2:1