Transcript: lnc-MSH4-1:3

Basic information

LNCipedia transcript ID: lnc-MSH4-1:3 
LNCipedia gene ID: lnc-MSH4-1
Ensembl Gene ID: ENSG00000225605
Ensembl Transcript ID: ENST00000436121
Location (hg38): chr1:76003026-76019350
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 656 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436121.2
Alternative gene names: ENSG00000225605.2; RP11-550H2.1; AC092813.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -173.501 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSH4-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MSH4-1:3
4.1 lnc-MSH4-1:3
5.0 lnc-MSH4-1:3
5.1 lnc-ST6GALNAC3-5:3
5.2 lnc-MSH4-1:3