Transcript: lnc-MSLN-2:2

Basic information

LNCipedia transcript ID: lnc-MSLN-2:2 
LNCipedia gene ID: lnc-MSLN-2
Location (hg38): chr16:741145-745827
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3416 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000026184.1|MICT00000124525.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.1117 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSLN-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HAGHL-2:3
5.0 lnc-HAGHL-2:3
5.1 lnc-DNASE1L2-85:2
5.2 lnc-MSLN-2:2