Transcript: lnc-MSMP-1:1

Basic information

LNCipedia transcript ID: lnc-MSMP-1:1 
LNCipedia gene ID: lnc-MSMP-1
Location (hg38): chr9:35756712-35757940
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 696 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000425499.1; RP11-112J3.15-001; OTTHUMT00000052386.1; NONHSAT130972
Alternative gene names: ENSG00000228843.1; RP11-112J3.15; OTTHUMG00000019883.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.5919 non-coding 
CPAT coding probability 30.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSMP-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSMP-1:1
4.0 lnc-MSMP-1:1
4.1 lnc-MSMP-1:1
5.0 lnc-MSMP-1:1
5.1 lnc-CD72-10:1
5.2 lnc-MSMP-1:1