Transcript: lnc-MSMP-1:2

Basic information

LNCipedia transcript ID: lnc-MSMP-1:2 
LNCipedia gene ID: lnc-MSMP-1
Ensembl Gene ID: ENSG00000228843
Ensembl Transcript ID: ENST00000425499
Location (hg38): chr9:35756712-35757940
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 696 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT130973; ENST00000425499.2
Alternative gene names: ENSG00000228843.2; RP11-112J3.15; AL133410.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.5919 non-coding 
CPAT coding probability 30.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSMP-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSMP-1:2
4.0 lnc-MSMP-1:2
4.1 lnc-MSMP-1:2
5.0 lnc-MSMP-1:2
5.1 lnc-CD72-10:2
5.2 lnc-MSMP-1:2