Transcript: lnc-MSR1-1:11

Basic information

LNCipedia transcript ID: lnc-MSR1-1:11 
LNCipedia gene ID: lnc-MSR1-1
Ensembl Gene ID: ENSG00000253496
Ensembl Transcript ID: ENST00000519280
Location (hg38): chr8:16686937-16690962
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 270 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519280; ENST00000519280.1; RP11-13N12.1-002; OTTHUMT00000376006.1; NONHSAT125255
Alternative gene names: ENSG00000253496; RP11-13N12.1; ENSG00000253496.1; OTTHUMG00000163858.2; ENSG00000253496.2; AC068992.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSR1-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MSR1-2:1
3.1 lnc-MSR1-2:1
4.0 lnc-MSR1-6:1
4.1 lnc-MSR1-1:11
5.0 lnc-MSR1-1:11
5.1 lnc-EGR3-63:7
5.2 lnc-MSR1-1:11