Transcript: lnc-MSR1-1:13

Basic information

LNCipedia transcript ID: lnc-MSR1-1:13 
LNCipedia gene ID: lnc-MSR1-1
Location (hg38): chr8:16645726-16662697
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 466 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT125251; FPKM1_group_30937_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.6328 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSR1-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSR1-1:4
4.0 lnc-FGF20-1:5
4.1 lnc-MSR1-1:13
5.0 lnc-MSR1-1:13
5.1 lnc-EGR3-63:9
5.2 lnc-MSR1-1:13