Transcript: lnc-MSR1-1:5

Basic information

LNCipedia transcript ID: lnc-MSR1-1:5 
LNCipedia gene ID: lnc-MSR1-1
Location (hg38): chr8:16655118-16915044
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000521411; ENST00000521411.1; RP11-13N12.1-001; OTTHUMT00000376005.2; NONHSAT125252
Alternative gene names: ENSG00000253496; RP11-13N12.1; ENSG00000253496.1; OTTHUMG00000163858.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.4547 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSR1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MSR1-1:1
3.1 lnc-MSR1-1:1
4.0 lnc-FGF20-1:2
4.1 lnc-MSR1-1:5
5.0 lnc-MSR1-1:5
5.1 lnc-EGR3-63:1
5.2 lnc-MSR1-1:5