Transcript: lnc-MSR1-3:1

Basic information

LNCipedia transcript ID: lnc-MSR1-3:1 
LNCipedia gene ID: lnc-MSR1-3
Location (hg38): chr8:14879057-14879819
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 309 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000532973.1; CTD-2023J5.1-001; OTTHUMT00000384495.1; NONHSAT125225
Alternative gene names: ENSG00000255076.1; CTD-2023J5.1; OTTHUMG00000165502.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.1992 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSR1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSR1-3:1
4.0 lnc-MSR1-3:1
4.1 lnc-MSR1-3:1
5.0 lnc-MSR1-3:1
5.1 lnc-PINX1-77:1
5.2 lnc-MSR1-3:1