Transcript: lnc-MSRA-1:1

Basic information

LNCipedia transcript ID: lnc-MSRA-1:1 
LNCipedia gene ID: lnc-MSRA-1
Ensembl Gene ID: ENSG00000261451
Ensembl Transcript ID: ENST00000562242
Location (hg38): chr8:10433672-10438312
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4641 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562242.1; RP11-981G7.1-001; OTTHUMT00000375444.2; NONHSAT124986
Alternative gene names: ENSG00000261451.1; RP11-981G7.1; OTTHUMG00000163781.2; AC104964.2; AC104964.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.1808 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSRA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSRA-1:1
4.0 lnc-MSRA-1:1
4.1 lnc-MSRA-1:1
5.0 lnc-MSRA-1:1
5.1 lnc-DEFB106A-48:1
5.2 lnc-MSRA-1:1