Transcript: lnc-MSRB3-3:1

Basic information

LNCipedia transcript ID: lnc-MSRB3-3:1 
LNCipedia gene ID: lnc-MSRB3-3
Ensembl Gene ID: ENSG00000256915
Ensembl Transcript ID: ENST00000540875
Location (hg38): chr12:65644334-65663299
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540875; ENST00000540875.1; RP11-221N13.4-001; OTTHUMT00000401556.1; NONHSAT029201
Alternative gene names: ENSG00000256915; RP11-221N13.4; ENSG00000256915.1; OTTHUMG00000168900.1; AC090023.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3521 non-coding 
CPAT coding probability 5.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSRB3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MSRB3-3:1
3.1 lnc-MSRB3-3:1
4.0 lnc-MSRB3-3:1
4.1 lnc-MSRB3-3:1
5.0 lnc-MSRB3-3:1
5.1 lnc-TBC1D30-14:1
5.2 lnc-MSRB3-3:1