Transcript: lnc-MSX1-2:1

Basic information

LNCipedia transcript ID: lnc-MSX1-2:1 
LNCipedia gene ID: lnc-MSX1-2
Location (hg38): chr4:4761805-4787374
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2341 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00007381; NONHSAT094952
Alternative gene names: XLOC_003433; linc-MSX1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.3912 non-coding 
CPAT coding probability 7.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSX1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MSX1-2:1
3.1 lnc-MSX1-2:1
4.0 lnc-MSX1-2:1
4.1 lnc-MSX1-2:1
5.0 lnc-MSX1-2:1
5.1 lnc-GPR78-48:2
5.2 lnc-MSX1-2:1