Transcript: lnc-MT1G-2:1

Basic information

LNCipedia transcript ID: lnc-MT1G-2:1 
LNCipedia gene ID: lnc-MT1G-2
Ensembl Gene ID: ENSG00000261302
Ensembl Transcript ID: ENST00000564560
Location (hg38): chr16:56709225-56729968
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 748 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564560.1; RP11-343H19.1-001; OTTHUMT00000432500.1
Alternative gene names: ENSG00000261302.1; RP11-343H19.1; OTTHUMG00000176549.1; ENSG00000261302.5; AC106779.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.132 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MT1G-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MT1G-2:1
4.0 lnc-MT1G-2:1
4.1 lnc-MT1G-2:1
5.0 lnc-MT1G-2:1
5.1 lnc-CFAP20-48:5
5.2 lnc-MT1G-2:1