Transcript: lnc-MTHFR-1:1

Basic information

LNCipedia transcript ID: lnc-MTHFR-1:1 
LNCipedia gene ID: lnc-MTHFR-1
Ensembl Gene ID: ENSG00000177553
Ensembl Transcript ID: ENST00000376620
RefSeq ID: NR_126000
Location (hg38): chr1:11777077-11779619
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1868 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000376620.3; RP11-56N19.5-001; OTTHUMT00000092169.1; NONHSAT000912; NR_126000; NR_126000.1
Alternative gene names: ENSG00000177553.6; RP11-56N19.5; OTTHUMG00000037775.1; AL953897.1; LOC102724659


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.6031 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTHFR-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTHFR-1:1
4.0 lnc-MTHFR-1:1
4.1 lnc-MTHFR-1:1
5.0 lnc-MTHFR-1:1
5.1 lnc-NPPB-3:1
5.2 lnc-MTHFR-1:1