Transcript: lnc-MTRNR2L5-1:1

Basic information

LNCipedia transcript ID: lnc-MTRNR2L5-1:1 
LNCipedia gene ID: lnc-MTRNR2L5-1
Ensembl Gene ID: ENSG00000228048
Ensembl Transcript ID: ENST00000427182
Location (hg38): chr10:55506219-55513217
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 436 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427182; ENST00000427182.1; RP11-598C10.1-001; OTTHUMT00000291332.1; NONHSAT013463
Alternative gene names: ENSG00000228048; RP11-598C10.1; ENSG00000228048.1; OTTHUMG00000144164.1; AL355314.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.2324 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTRNR2L5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTRNR2L5-1:1
3.1 lnc-MTRNR2L5-1:1
4.0 lnc-MTRNR2L5-1:1
4.1 lnc-MTRNR2L5-1:1
5.0 lnc-MTRNR2L5-1:1
5.1 lnc-MTRNR2L5-1:1
5.2 lnc-MTRNR2L5-1:1