Transcript: lnc-MTX3-1:1

Basic information

LNCipedia transcript ID: lnc-MTX3-1:1 
LNCipedia gene ID: lnc-MTX3-1
Ensembl Gene ID: ENSG00000250258
Ensembl Transcript ID: ENST00000421252
Location (hg38): chr5:79774348-79816190
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 460 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421252.2; CTC-431G16.2-001; OTTHUMT00000369922.1; NONHSAT102374
Alternative gene names: ENSG00000250258.1; CTC-431G16.2; OTTHUMG00000162658.1; AC008496.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.8139 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTX3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTX3-1:1
4.0 lnc-MTX3-1:1
4.1 lnc-MTX3-1:1
5.0 lnc-MTX3-1:1
5.1 lnc-ANKRD34B-21:1
5.2 lnc-MTX3-1:1