Transcript: lnc-MUC2-1:1

Basic information

LNCipedia transcript ID: lnc-MUC2-1:1 
LNCipedia gene ID: lnc-MUC2-1
Location (hg38): chr11:1049391-1057094
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2928 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019195; NONHSAT017375
Alternative gene names: XLOC_009021; linc-MUC2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.2312 non-coding 
CPAT coding probability 99.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MUC2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MUC2-1:1
3.1 lnc-MUC2-1:1
4.0 lnc-MUC2-1:1
4.1 lnc-MUC2-1:1
5.0 lnc-MUC2-1:1
5.1 lnc-OR51M1-99:1
5.2 lnc-MUC2-1:1