Transcript: lnc-MUC2-1:4

Basic information

LNCipedia transcript ID: lnc-MUC2-1:4 
LNCipedia gene ID: lnc-MUC2-1
Ensembl Gene ID: ENSG00000254872
Ensembl Transcript ID: ENST00000617529
Location (hg38): chr11:1052611-1055749
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3139 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531160; ENST00000531160.1; RP13-870H17.3-002; OTTHUMT00000382304.1; NONHSAT017376; ENST00000617529.1
Alternative gene names: ENSG00000254872; RP13-870H17.3; ENSG00000254872.1; OTTHUMG00000165161.1; ENSG00000254872.3; AC139749.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.2312 non-coding 
CPAT coding probability 43.59% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MUC2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MUC2-1:4
3.1 lnc-MUC2-1:4
4.0 lnc-MUC2-1:4
4.1 lnc-MUC2-1:4
5.0 lnc-MUC2-1:4
5.1 lnc-OR51M1-99:5
5.2 lnc-MUC2-1:4