Transcript: lnc-MUC20-67:48

Basic information

LNCipedia transcript ID: lnc-MUC20-67:48 
HGNC Gene Symbol: lnc-MUC20-67    
HGNC Full Gene Name: MUC20 overlapping transcript
Ensembl Gene ID: ENSG00000242086
Ensembl Transcript ID: ENST00000594715
Location (hg38): chr3:195688582-195708468
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 729 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT094189; ENST00000594715.1; ENST00000594715.5
Alternative gene names: ENSG00000242086.4; LINC00969; ENSG00000242086.8; ; ENST00000453324; MUC20-OT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.2871 non-coding 
CPAT coding probability 6.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MUC20-67:48 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC069257.9.1-4:41
4.0 LINC00969:48
4.1 LINC00969:48
5.0 LINC00969:48
5.1 lnc-MUC20-13:48
5.2 lnc-MUC20-67:48