Transcript: lnc-MUC22-1:11

Basic information

LNCipedia transcript ID: lnc-MUC22-1:11 
LNCipedia gene ID: lnc-MUC22-1
Ensembl Gene ID: ENSG00000228789
Ensembl Transcript ID: ENST00000646461
Location (hg38): chr6:31054330-31056790
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 760 bp
Exons: 2
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000646461.1
Alternative gene names: ENSG00000228789.7; HCG22


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -329.5349 non-coding 
CPAT coding probability 89.53% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MUC22-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-TNF-38:11
5.1 lnc-TNF-38:11
5.2 lnc-MUC22-1:11