Transcript: lnc-MVB12B-2:1

Basic information

LNCipedia transcript ID: lnc-MVB12B-2:1 
LNCipedia gene ID: lnc-MVB12B-2
Ensembl Gene ID: ENSG00000226078
Ensembl Transcript ID: ENST00000425153
Location (hg38): chr9:126527618-126530343
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015754; ENST00000425153; ENST00000425153.1; RP11-205K6.2-001; OTTHUMT00000054117.1; NONHSAT134771
Alternative gene names: XLOC_007568; linc-LMX1B-1; ENSG00000226078; RP11-205K6.2; ENSG00000226078.1; OTTHUMG00000020689.1; AL356309.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -622.8501 non-coding 
CPAT coding probability 2.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MVB12B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM125B-2:1
3.1 lnc-FAM125B-2:1
4.0 lnc-FAM125B-2:1
4.1 lnc-FAM125B-2:1
5.0 lnc-FAM125B-2:1
5.1 lnc-PTPA-134:1
5.2 lnc-MVB12B-2:1