Transcript: lnc-MVP-3:14

Basic information

LNCipedia transcript ID: lnc-MVP-3:14 
LNCipedia gene ID: lnc-MVP-3
Location (hg38): chr16:29863834-29868047
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 756 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000398859.3; CTD-2574D22.5-001; OTTHUMT00000435598.1
Alternative gene names: ENSG00000214725.3; CTD-2574D22.5; OTTHUMG00000177145.1; CDIPT-AS1; ENSG00000214725.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 90.2553 coding 
CPAT coding probability 8.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MVP-3:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MVP-1:2
4.0 CDIPT-AS1:4
4.1 CDIPT-AS1:4
5.0 CDIPT-AS1:4
5.1 lnc-PRRT2-8:25
5.2 lnc-MVP-3:14