Transcript: lnc-MVP-3:7

Basic information

LNCipedia transcript ID: lnc-MVP-3:7 
LNCipedia gene ID: lnc-MVP-3
Location (hg38): chr16:29863593-29868050
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 726 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000565014.1; CTD-2574D22.5-002; OTTHUMT00000435597.1; NONHSAT141660
Alternative gene names: ENSG00000214725.3; CTD-2574D22.5; OTTHUMG00000177145.1; CDIPT-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 90.2553 coding 
CPAT coding probability 45.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MVP-3:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MVP-1:1
4.0 CDIPT-AS1:1
4.1 CDIPT-AS1:1
5.0 CDIPT-AS1:1
5.1 lnc-PRRT2-8:18
5.2 lnc-MVP-3:7