Transcript: lnc-MYB-1:1

Basic information

LNCipedia transcript ID: lnc-MYB-1:1 
LNCipedia gene ID: lnc-MYB-1
Ensembl Gene ID: ENSG00000224374
Ensembl Transcript ID: ENST00000434255
Location (hg38): chr6:135259996-135260933
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 216 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011379; ENST00000434255.1; RP1-32B1.4-001; OTTHUMT00000042346.1; NONHSAT115077
Alternative gene names: XLOC_005471; linc-PDE7B; ENSG00000224374.1; RP1-32B1.4; OTTHUMG00000015628.1; AL023693.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.3781 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYB-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYB-1:1
3.1 lnc-MYB-1:1
4.0 lnc-MYB-1:1
4.1 lnc-MYB-1:1
5.0 lnc-MYB-1:1
5.1 lnc-TBPL1-29:2
5.2 lnc-MYB-1:1