Transcript: lnc-MYB-3:1

Basic information

LNCipedia transcript ID: lnc-MYB-3:1 
LNCipedia gene ID: lnc-MYB-3
Ensembl Gene ID: ENSG00000232876
Ensembl Transcript ID: ENST00000447508
Location (hg38): chr6:135055033-135060550
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 790 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011378; ENST00000447508.1; CTA-212D2.2-001; OTTHUMT00000042338.1; NONHSAT115061
Alternative gene names: XLOC_005470; linc-MYB-1; ENSG00000232876.1; CTA-212D2.2; OTTHUMG00000015625.1; AL353596.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -345.9102 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYB-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYB-2:1
3.1 lnc-MYB-3:1
4.0 lnc-MYB-3:1
4.1 lnc-MYB-3:1
5.0 lnc-MYB-3:1
5.1 lnc-TBPL1-20:4
5.2 lnc-MYB-3:1