Transcript: lnc-MYBBP1A-2:3

Basic information

LNCipedia transcript ID: lnc-MYBBP1A-2:3 
LNCipedia gene ID: lnc-MYBBP1A-2
Ensembl Gene ID: ENSG00000262823
Ensembl Transcript ID: ENST00000577176
Location (hg38): chr17:4482019-4483656
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 696 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577176.1; RP13-580F15.2-002; OTTHUMT00000438800.1; NONHSAT145080
Alternative gene names: ENSG00000262823.1; RP13-580F15.2; OTTHUMG00000177738.1; AC127521.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.1401 non-coding 
CPAT coding probability 7.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYBBP1A-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYBBP1A-2:3
4.0 lnc-MYBBP1A-2:3
4.1 lnc-MYBBP1A-2:3
5.0 lnc-MYBBP1A-2:3
5.1 lnc-PHF23-67:3
5.2 lnc-MYBBP1A-2:3