Transcript: lnc-MYCBP2-1:7

Basic information

LNCipedia transcript ID: lnc-MYCBP2-1:7 
LNCipedia gene ID: lnc-MYCBP2-1
Ensembl Gene ID: ENSG00000233379
Ensembl Transcript ID: ENST00000435281
Location (hg38): chr13:77939162-77944874
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 902 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435281; ENST00000435281.1; LINC00439-001; OTTHUMT00000045354.1; NONHSAT034434
Alternative gene names: ENSG00000233379; RP11-318G21.4; ENSG00000233379.1; LINC00439; OTTHUMG00000017114.1; AL139002.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.0329 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYCBP2-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EDNRB-1:1
3.1 lnc-EDNRB-1:1
4.0 lnc-EDNRB-1:1
4.1 lnc-EDNRB-1:1
5.0 lnc-EDNRB-1:1
5.1 lnc-IRS2-151:1
5.2 lnc-MYCBP2-1:7