Transcript: lnc-MYEF2-2:1

Basic information

LNCipedia transcript ID: lnc-MYEF2-2:1 
LNCipedia gene ID: lnc-MYEF2-2
Ensembl Gene ID: ENSG00000259385
Ensembl Transcript ID: ENST00000559875
Location (hg38): chr15:48192191-48201684
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 695 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559875.1; RP11-605F22.1-001; OTTHUMT00000417137.1; NONHSAT042335
Alternative gene names: ENSG00000259385.1; RP11-605F22.1; OTTHUMG00000172153.1; AC066612.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 198.5269 coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MYEF2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYEF2-2:1
4.0 lnc-MYEF2-2:1
4.1 lnc-MYEF2-2:1
5.0 lnc-MYEF2-2:1
5.1 lnc-SERINC4-56:1
5.2 lnc-MYEF2-2:1