Transcript: lnc-MYL2-1:2

Basic information

LNCipedia transcript ID: lnc-MYL2-1:2 
LNCipedia gene ID: lnc-MYL2-1
Ensembl Gene ID: ENSG00000258240
Ensembl Transcript ID: ENST00000548329
Location (hg38): chr12:110951711-110957811
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548329; ENST00000548329.1; RP1-46F2.3-002; OTTHUMT00000404688.1; NONHSAT030717
Alternative gene names: ENSG00000258240; RP1-46F2.3; ENSG00000258240.1; OTTHUMG00000169537.1; ENSG00000258240.5; AC002351.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 50.7427 non-coding 
CPAT coding probability 29.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MYL2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYL2-1:2
3.1 lnc-MYL2-1:2
4.0 lnc-MYL2-1:2
4.1 lnc-MYL2-1:2
5.0 lnc-MYL2-1:2
5.1 lnc-MYL2-1:2
5.2 lnc-MYL2-1:2