Transcript: lnc-MYO1D-1:1

Basic information

LNCipedia transcript ID: lnc-MYO1D-1:1 
LNCipedia gene ID: lnc-MYO1D-1
Location (hg38): chr17:32421286-32445546
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3030 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000429292; NONHSAT052946
Alternative gene names: ENSG00000246715; AC005899.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.014 non-coding 
CPAT coding probability 36.45% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MYO1D-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYO1D-1:1
3.1 lnc-MYO1D-1:1
4.0 lnc-MYO1D-1:1
4.1 lnc-MYO1D-1:1
5.0 lnc-MYO1D-1:1
5.1 lnc-SLC6A4-112:2
5.2 lnc-MYO1D-1:1