Transcript: lnc-MYOC-1:3

Basic information

LNCipedia transcript ID: lnc-MYOC-1:3 
LNCipedia gene ID: lnc-MYOC-1
Ensembl Gene ID: ENSG00000225243
Ensembl Transcript ID: ENST00000422841
Location (hg38): chr1:171199244-171224284
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 658 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422841.1; RP1-127D3.4-001; OTTHUMT00000086228.1; NONHSAT007519; ENST00000422841.5
Alternative gene names: ENSG00000225243.1; RP1-127D3.4; OTTHUMG00000035507.1; ENSG00000225243.5; AL021026.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.1356 non-coding 
CPAT coding probability 4.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYOC-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYOC-1:3
4.0 lnc-MYOC-1:3
4.1 lnc-MYOC-1:3
5.0 lnc-MYOC-1:3
5.1 lnc-SH2D1B-93:3
5.2 lnc-MYOC-1:3