Transcript: lnc-MYOM2-4:2

Basic information

LNCipedia transcript ID: lnc-MYOM2-4:2 
LNCipedia gene ID: lnc-MYOM2-4
Ensembl Gene ID: ENSG00000253853
Ensembl Transcript ID: ENST00000520024
Location (hg38): chr8:2727318-2822482
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 610 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520024; ENST00000520024.1; GS1-57L11.1-001; OTTHUMT00000374512.1; NONHSAT124736
Alternative gene names: ENSG00000253853; GS1-57L11.1; ENSG00000253853.1; OTTHUMG00000163609.1; AC246817.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.514 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYOM2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYOM2-3:2
3.1 lnc-MYOM2-4:2
4.0 lnc-MYOM2-4:2
4.1 lnc-MYOM2-4:2
5.0 lnc-MYOM2-4:2
5.1 lnc-DEFB106A-86:8
5.2 lnc-MYOM2-4:2