Transcript: lnc-N4BP1-1:1

Basic information

LNCipedia transcript ID: lnc-N4BP1-1:1 
LNCipedia gene ID: lnc-N4BP1-1
Ensembl Gene ID: ENSG00000261802
Ensembl Transcript ID: ENST00000565812
Location (hg38): chr16:48447904-48448398
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 308 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565812.1; RP11-44I10.6-001; OTTHUMT00000429917.1; NONHSAT142326
Alternative gene names: ENSG00000261802.1; RP11-44I10.6; OTTHUMG00000175418.1; AC026470.4; AC026470.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -256.6922 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-N4BP1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-N4BP1-1:1
4.0 lnc-N4BP1-1:1
4.1 lnc-N4BP1-1:1
5.0 lnc-N4BP1-1:1
5.1 lnc-CFAP20-154:1
5.2 lnc-N4BP1-1:1