Transcript: lnc-NAA35-16:1

Basic information

LNCipedia transcript ID: lnc-NAA35-16:1 
LNCipedia gene ID: lnc-NAA35-16
Ensembl Gene ID: ENSG00000232211
Ensembl Transcript ID: ENST00000443163
Location (hg38): chr9:86632147-86696496
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 530 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015703; ENST00000443163; ENST00000443163.1; RP11-395D3.1-001; OTTHUMT00000052927.1; NONHSAT132838
Alternative gene names: XLOC_007436; linc-C9orf170-3; ENSG00000232211; RP11-395D3.1; ENSG00000232211.1; OTTHUMG00000020140.1; AL353613.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.0585 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAA35-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf170-3:1
3.1 lnc-C9orf170-3:1
4.0 lnc-C9orf170-3:1
4.1 lnc-C9orf170-3:1
5.0 lnc-C9orf170-3:1
5.1 lnc-SECISBP2-48:1
5.2 lnc-NAA35-16:1