Transcript: lnc-NACA2-4:1

Basic information

LNCipedia transcript ID: lnc-NACA2-4:1 
LNCipedia gene ID: lnc-NACA2-4
Ensembl Gene ID: ENSG00000267137
Ensembl Transcript ID: ENST00000592766
Location (hg38): chr17:61460224-61463384
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 552 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT055135; ENST00000592766.1
Alternative gene names: ENSG00000267137.1; RP11-15K2.2; AC005901.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -270.2263 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NACA2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NACA2-4:1
4.0 lnc-NACA2-4:1
4.1 lnc-NACA2-4:1
5.0 lnc-NACA2-4:1
5.1 lnc-TUBD1-20:1
5.2 lnc-NACA2-4:1