Transcript: lnc-NAGLU-3:1

Basic information

LNCipedia transcript ID: lnc-NAGLU-3:1 
LNCipedia gene ID: lnc-NAGLU-3
Ensembl Gene ID: ENSG00000267632
Ensembl Transcript ID: ENST00000591237
Location (hg38): chr17:42509784-42511519
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1736 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053716; ENST00000591237.1
Alternative gene names: ENSG00000267632.1; RP11-400F19.18; AC067852.6; AC067852.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.4035 non-coding 
CPAT coding probability 3.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAGLU-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NAGLU-3:1
4.0 lnc-NAGLU-3:1
4.1 lnc-NAGLU-3:1
5.0 lnc-NAGLU-3:1
5.1 lnc-COASY-10:1
5.2 lnc-NAGLU-3:1