Transcript: lnc-NAIF1-1:2

Basic information

LNCipedia transcript ID: lnc-NAIF1-1:2 
LNCipedia gene ID: lnc-NAIF1-1
Ensembl Gene ID: ENSG00000230848
Ensembl Transcript ID: ENST00000414976
Location (hg38): chr9:128039135-128057362
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 380 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015885; ENST00000414976.1; RP11-379C10.1-001; OTTHUMT00000054329.1; NONHSAT134884
Alternative gene names: XLOC_007857; linc-FAM102A; ENSG00000230848.1; RP11-379C10.1; OTTHUMG00000020726.1; AL360268.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.264 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAIF1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NAIF1-1:2
3.1 lnc-NAIF1-1:2
4.0 lnc-NAIF1-1:2
4.1 lnc-NAIF1-1:2
5.0 lnc-NAIF1-1:2
5.1 lnc-SPOUT1-34:3
5.2 lnc-NAIF1-1:2