Transcript: lnc-NAIP-1:5

Basic information

LNCipedia transcript ID: lnc-NAIP-1:5 
LNCipedia gene ID: lnc-NAIP-1
Location (hg38): chr5:71033168-71034400
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 707 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000520085; ENST00000520085.1; RP11-195E2.4-001; OTTHUMT00000372640.1; NONHSAT101993
Alternative gene names: ENSG00000254353; RP11-195E2.4; ENSG00000254353.1; OTTHUMG00000163317.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.5447 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAIP-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2H2-1:1
3.1 lnc-GTF2H2-1:1
4.0 lnc-GTF2H2-1:1
4.1 lnc-GTF2H2-1:1
5.0 lnc-GTF2H2-1:1
5.1 lnc-TRIM23-72:1
5.2 lnc-NAIP-1:5