Transcript: lnc-NAPB-2:1

Basic information

LNCipedia transcript ID: lnc-NAPB-2:1 
LNCipedia gene ID: lnc-NAPB-2
Ensembl Gene ID: ENSG00000234832
Ensembl Transcript ID: ENST00000442884
Location (hg38): chr20:23346941-23351486
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 814 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442884.1; RP3-322G13.7-001; OTTHUMT00000078324.1; NONHSAT079050
Alternative gene names: ENSG00000234832.1; RP3-322G13.7; OTTHUMG00000032064.1; AL096677.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.2823 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAPB-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NAPB-2:1
4.0 lnc-NAPB-2:1
4.1 lnc-NAPB-2:1
5.0 lnc-NAPB-2:1
5.1 lnc-CST4-14:2
5.2 lnc-NAPB-2:1