Transcript: lnc-NAPG-4:1

Basic information

LNCipedia transcript ID: lnc-NAPG-4:1 
LNCipedia gene ID: lnc-NAPG-4
Ensembl Gene ID: ENSG00000263952
Ensembl Transcript ID: ENST00000579321
Location (hg38): chr18:10893617-10894805
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 352 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579321.1; RP11-513M1.1-001; OTTHUMT00000442233.1; NONHSAT057286; ENST00000579321.5
Alternative gene names: ENSG00000263952.1; RP11-513M1.1; OTTHUMG00000178501.1; ENSG00000263952.5; AP005120.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5393 non-coding 
CPAT coding probability 3.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAPG-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NAPG-4:1
4.0 lnc-NAPG-4:1
4.1 lnc-NAPG-4:1
5.0 lnc-NAPG-4:1
5.1 lnc-RIOK3-190:2
5.2 lnc-NAPG-4:1