Transcript: lnc-NAT1-3:17

Basic information

LNCipedia transcript ID: lnc-NAT1-3:17 
LNCipedia gene ID: lnc-NAT1-3
Ensembl Gene ID: ENSG00000245281
Ensembl Transcript ID: ENST00000521775
Location (hg38): chr8:18085027-18095907
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 595 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521775; ENST00000521775.1; CTD-2547L16.1-004; OTTHUMT00000375017.1; NONHSAT125330; ENST00000521775.5
Alternative gene names: ENSG00000245281; CTD-2547L16.1; ENSG00000245281.2; OTTHUMG00000163728.1; ENSG00000245281.6; AC124242.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.4785 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAT1-3:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCM1-2:4
3.1 lnc-PCM1-3:4
4.0 lnc-PCM1-3:4
4.1 lnc-NAT1-3:17
5.0 lnc-NAT1-3:17
5.1 lnc-PCM1-3:29
5.2 lnc-NAT1-3:17