Transcript: lnc-NAV1-9:3

Basic information

LNCipedia transcript ID: lnc-NAV1-9:3 
LNCipedia gene ID: lnc-NAV1-9
Location (hg38): chr1:201507241-201533608
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 340 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000454651.1; RP11-134G8.7-001; OTTHUMT00000087026.1; NONHSAT008755
Alternative gene names: ENSG00000224536.1; RP11-134G8.7; OTTHUMG00000035772.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.8945 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NAV1-9:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NAV1-3:1
4.0 lnc-NAV1-2:9
4.1 lnc-NAV1-2:9
5.0 lnc-NAV1-2:9
5.1 lnc-ADORA1-82:3
5.2 lnc-NAV1-9:3